Protein Sequence Analysis

A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry

Algorithms / Computational Biology / Mass Spectrometry / Biological Sciences / Mathematical Sciences / Tandem Mass Spectrometry / Space Use / Protein Sequence Analysis / Spectrum / Amino Acid Profile / Experimental Data / Tandem Mass Spectrometry / Space Use / Protein Sequence Analysis / Spectrum / Amino Acid Profile / Experimental Data

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A Novel Brain-Expressed Protein Related to Carnitine Palmitoyltransferase I

Information Systems / Genetics / Genomics / Phylogeny / Brain / Humans / Sequence alignment / Fatty Acid Synthesis / Mice / Animals / Fatty Acid Oxidation / Introns / Protein Sequence Analysis / Genome Organization / Fatty Acid / Amino Acid Sequence / Brain Function / Catalytic Activity / Gene Expression Regulation / Molecular Sequence Data / Humans / Sequence alignment / Fatty Acid Synthesis / Mice / Animals / Fatty Acid Oxidation / Introns / Protein Sequence Analysis / Genome Organization / Fatty Acid / Amino Acid Sequence / Brain Function / Catalytic Activity / Gene Expression Regulation / Molecular Sequence Data

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Paratrypanosoma Is a Novel Early-Branching Trypanosomatid

Biological Sciences / Phylogeny / Sequence alignment / Female / Animals / Genome / Culex / Protein Sequence Analysis / Amino Acid Sequence / Molecular Sequence Data / Genome / Culex / Protein Sequence Analysis / Amino Acid Sequence / Molecular Sequence Data

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The transcriptomes of the cattle parasitic nematode Ostertagia ostartagi

Microbiology / Caenorhabditis elegans / Comparative Genomics / Veterinary / Veterinary Parasitology / RNA interference / Parasite / Animals / Fisheries Sciences / Life Cycle / Cattle / Protein Sequence Analysis / Control Strategy / Larva / Veterinary Sciences / Large Scale / In Silico / Gene Expression Regulation / Gene expression profiling / ESTs / Differential expression / RNA interference / Parasite / Animals / Fisheries Sciences / Life Cycle / Cattle / Protein Sequence Analysis / Control Strategy / Larva / Veterinary Sciences / Large Scale / In Silico / Gene Expression Regulation / Gene expression profiling / ESTs / Differential expression

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A novel embryo-specific barley cDNA clone encodes a protein with homologies to bacterial glucose and ribitol dehydrogenase

Genetics / Plant Biology / Desiccation Tolerance / Plant growth hormone / Protein Sequence Analysis / Seeds / Carbohydrate metabolism / Amino Acid Sequence / Base Sequence / Embryos / PLANT PROTEINS / Planta / Nucleotides / Embryo Development / Molecular Sequence Data / Seeds / Carbohydrate metabolism / Amino Acid Sequence / Base Sequence / Embryos / PLANT PROTEINS / Planta / Nucleotides / Embryo Development / Molecular Sequence Data

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PAR-3D: a server to predict protein active site residues

Documentation / Computational Biology / Structural Genomics / Biological Sciences / Software / Environmental Sciences / Sequence alignment / Protein structure / Nucleic Acids / Proteins / Enzyme / Information Storage and Retrieval / Protein Sequence Analysis / Active site / Indexation / S100 protein family / Protein Binding / Internet / Ligands / Binding Site / Environmental Sciences / Sequence alignment / Protein structure / Nucleic Acids / Proteins / Enzyme / Information Storage and Retrieval / Protein Sequence Analysis / Active site / Indexation / S100 protein family / Protein Binding / Internet / Ligands / Binding Site

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PSI-2: structural genomics to cover protein domain family space

Genomics / Structure / Computational Biology / Proteomics / Structural Genomics / Biological Sciences / Humans / Animals / Proteins / CHEMICAL SCIENCES / Protein Sequence Analysis / Protein Domains / Protein Conformation / Biological Sciences / Humans / Animals / Proteins / CHEMICAL SCIENCES / Protein Sequence Analysis / Protein Domains / Protein Conformation

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CHOP proteins into structural domain‐like fragments

Structural Genomics / Biological Sciences / Mathematical Sciences / Protein structure / Proteins / Amino Acids / Protein Sequence Analysis / Clustering Method / Protein Domains / Proteome analysis / Genome sequence / Full Length Movies / Amino Acids / Protein Sequence Analysis / Clustering Method / Protein Domains / Proteome analysis / Genome sequence / Full Length Movies

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SKPDB: a structural database of shikimate pathway enzymes

Relational Database / Computational Biology / Structure Based Drug Design / Biological Sciences / Protein Structure and Function / Software / Enzymes / Virtual screening / Mathematical Sciences / Drug Design / BMC Bioinformatics / Enzyme / Protein Sequence Analysis / Protein Conformation / Metabolic pathway / Amino Acid Sequence / Shikimic acid / Structural model / Software / Enzymes / Virtual screening / Mathematical Sciences / Drug Design / BMC Bioinformatics / Enzyme / Protein Sequence Analysis / Protein Conformation / Metabolic pathway / Amino Acid Sequence / Shikimic acid / Structural model

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PGTdb: a database providing growth temperatures of prokaryotes

Bioinformatics / Cell Division / Database Management Systems / Biological Sciences / Mathematical Sciences / Archaea / Temperature / Proteins / Information Storage and Retrieval / Protein Sequence Analysis / Protein Conformation / Protein Denaturation / Archaea / Temperature / Proteins / Information Storage and Retrieval / Protein Sequence Analysis / Protein Conformation / Protein Denaturation

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FATTY ACID DESATURASE4 of Arabidopsis encodes a protein distinct from characterized fatty acid desaturases

Plant Biology / Phylogeny / Sequence alignment / Plant / Arabidopsis / Molecular cloning / Protein Sequence Analysis / Fatty Acid / Amino Acid Sequence / Chloroplasts / Molecular cloning / Protein Sequence Analysis / Fatty Acid / Amino Acid Sequence / Chloroplasts

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The transcriptomes of the cattle parasitic nematode Ostertagia ostartagi

Microbiology / Caenorhabditis elegans / Comparative Genomics / Veterinary / Veterinary Parasitology / RNA interference / Animals / Fisheries Sciences / Life Cycle / Cattle / Protein Sequence Analysis / Control Strategy / Larva / Veterinary Sciences / Large Scale / In Silico / Gene Expression Regulation / Gene expression profiling / RNA interference / Animals / Fisheries Sciences / Life Cycle / Cattle / Protein Sequence Analysis / Control Strategy / Larva / Veterinary Sciences / Large Scale / In Silico / Gene Expression Regulation / Gene expression profiling

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A systematic approach to modeling, capturing, and disseminating proteomics experimental data

Documentation / Modeling / Proteomics / Knowledge Representation / Gene expression / Multidisciplinary / Nature / Hypermedia / Database Management Systems / Software / Software Design / Automation / Unified Modelling Language / Proteins / Computer User Interface Design / Information Storage and Retrieval / Protein Sequence Analysis / Information Dissemination / Very high throughput / Unified Modeling Language / Structured Query Language / Protein Conformation / Proteome / Experimental Data / Extensible Markup Language / Multidisciplinary / Nature / Hypermedia / Database Management Systems / Software / Software Design / Automation / Unified Modelling Language / Proteins / Computer User Interface Design / Information Storage and Retrieval / Protein Sequence Analysis / Information Dissemination / Very high throughput / Unified Modeling Language / Structured Query Language / Protein Conformation / Proteome / Experimental Data / Extensible Markup Language

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ARAMEMNON, a Novel Database for Arabidopsis Integral Membrane Proteins

Cyanobacteria / Membrane Proteins / Biological Sciences / Phylogeny / Plant Physiology / Aquaporins (AQP) / Plant / Cluster Analysis / Special functions / Arabidopsis / Subcellular Localization / Computer Program / Protein Sequence Analysis / SIGNAL PEPTIDE / S100 protein family / Membrane Protein / Internet / Aquaporins (AQP) / Plant / Cluster Analysis / Special functions / Arabidopsis / Subcellular Localization / Computer Program / Protein Sequence Analysis / SIGNAL PEPTIDE / S100 protein family / Membrane Protein / Internet

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ARAMEMNON, a Novel Database for Arabidopsis Integral Membrane Proteins1

Cyanobacteria / Membrane Proteins / Biological Sciences / Phylogeny / Plant Physiology / Aquaporins (AQP) / Plant / Cluster Analysis / Special functions / Arabidopsis / Subcellular Localization / Computer Program / Protein Sequence Analysis / SIGNAL PEPTIDE / S100 protein family / Membrane Protein / Internet / Aquaporins (AQP) / Plant / Cluster Analysis / Special functions / Arabidopsis / Subcellular Localization / Computer Program / Protein Sequence Analysis / SIGNAL PEPTIDE / S100 protein family / Membrane Protein / Internet

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Small molecule Plasmodium FKBP35 inhibitor as a potential antimalaria agent

Feasibility Studies / Protein Sequence Analysis / Plasmodium falciparum / Antimalarials / Protozoan Proteins / Amino Acid Sequence / Protein Binding / Cell Survival / Amino Acid Sequence / Protein Binding / Cell Survival

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